Computational Framework for Biotechnological Research

Nucleotide Database

The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.

Name Related Links
National Center for Biotechnology Information (GenBank) http://www.ncbi.nlm.nih.gov
EMBL Nucleotide Sequence Database http://www.ebi.ac.uk
Index of New EMBL Nucleotides ( EBI) http://srs.ebi.ac.uk
DNA Data Bank of Japan http://www.ddbj.nig.ac.jp
IMGT (International ImMunoGeneTics Database) http://imgt.cines.fr
dbES http://www.ncbi.nlm.nih.gov/dbEST
dbSTS http://www.ncbi.nlm.nih.gov/dbSTS
Ensembl http://www.ensembl.org/index.html
UCSC Genome Browser http://genome.ucsc.edu/
AsDb (Aberrant Splicing db) http://www.hgc.jp/~knakai/asdb.html
ACUTS http://pbil.univ-lyon1.fr/acuts/ACUTS.html
Codon Usage Db http://www.kazusa.or.jp/codon
EPD (Eukaryotic Promoter db) http://www.epd.isb-sib.ch
HOVERGEN(Homologous Vertebrate Genes) http://pbil.univ-lyon1.fr/databases/hovergen.php
RPD (Ribosomal db Project) http://rdp.cme.msu.edu
PLACE http://www.dna.affrc.go.jp/PLACE
PlantCARE http://bioinformatics.psb.ugent.be/webtools/plantcare/html
smiRNAdb http://www.mirz.unibas.ch/cloningprofiles
ssu rRNA http://bioinformatics.psb.ugent.be/webtools/rRNA/ssu
Isu rRNA http://bioinformatics.psb.ugent.be/webtools/rRNA/lsu
5S rRNA http://rose.man.poznan.pl/5SData
Greengenes http://greengenes.lbl.gov/cgi-bin/nph-index.cgi
tmRNA http://www.indiana.edu/~tmrna
tmRDB http://www.ag.auburn.edu/mirror/tmRDB
RNA editing http://dna.kdna.ucla.edu/rna/index.aspx
RNAmod db http://rna-mdb.cas.albany.edu/RNAmods
MPDB http://bioinformatics.istge.it/cldb/mpdb.html
VectorDB http://life.nthu.edu.tw/~g854202/Vecdtb.html

 
 
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